The the boat has has multiple motors each with its own speed controller then place a separate fuse between the battery and each speed controller, as close to the battery as possible.
If the boat has multiple motors powered by the same battery and the same speed controller then place a fuse between each motor and the speed controller. Next place a fuse between the battery and the speed controller. The fuse protecting each motor should be a slow-blow fuse sized to blow a bit under the stall current of the motor. The fuse protecting the battery, wiring and speed controller should be sized above the stall current of a single motor, but below the point at which fire in the wiring (yes I've seen that happen on fast electric boats) or damage to the battery or damage to the speed controller occurs. With this seizure of a single motor will blow its fuse but allow the other motor(s) to continue operation.
In electrical engineering this is known as 'Discrimination' or "Selectivity'.
https://en.wikipedia.org/wiki/Selectivity_(circuit_breakers)
It should be realized that staring current of a motor is higher than the running current. A fast blowing has a good chance of blowing under normal operating conditions, particularly quickly going from full ahead to full astern.